species:   Clros
pid:       PID2262
parent:    cro-mir-56
paralog:   a
locus:     CADEHS020000236.2:3271-3360
matures:   ['UACGUUCGUAUUGCCAGUAUG', 'UGGUGGUUAUGCAAACGUAGU']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000236.2:3271-3360

0 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

*********************                                              *********************  
UGGUGGUUAUGCAAACGUAGUCCCGGUCAAGACGUUCAAGAGGCUCAGCUUGCUCUAAUUGAUCGGGACUACGUUCGUAUUGCCAGUAUG
((.((((.((((.(((((((((((((((((...(..((((........))))..)...))))))))))))))))).)))).)))).))..
---------------------------------------------------------------------UACGUUCGUAUUGCCAGUAUG l=21 a=0 c
UGGUGGUUAUGCAAACGUAGU--------------------------------------------------------------------- l=21 a=0 c*
---------------------------------------------------------------------UACGUUCGUAUUGCCAGUA-- l=19 a=1 ma
--GUGGUUAUGCAAACGUAGU--------------------------------------------------------------------- l=19 a=0 ma*

---------------------------------------------------------------------UACGUUCGUAUUGCCAGUA-- l=19 a=1 (ma)

mb-01011
ax-1011101
ku-01
ss-100011111110
fn-011
